In a large bowl, mix the coconut oil, honey, vanilla extract, and vinegar with a whisk until well combined.
Add the coconut flour, cocoa, and baking soda, mixing well.
Add the eggs and mix until well combined.
Stir in the chocolate chips.
Fill a lined cupcake pan - regular size, 12 cup. Divide batter evenly.
Bake at 350 degrees for 25 minutes.
Lightly press the top of the cupcake and if it springs back, then they are ready to come out of the oven. If not, bake a few minutes longer.